PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v1946420.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family TCP
Protein Properties Length: 415aa    MW: 45207.4 Da    PI: 7.8657
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v1946420.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.92e-39411742133
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksa 94 
                       g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk+++WL+++a+ ai el+++++  ++   +++++++++ n++ ++ +ksa
  Lj6g3v1946420.2  41 SGGKDRHSKVMTSKGLRDRRVRLSVSTAIQFYDLQDRLGVDQPSKAVDWLIKAAEDAISELPSLNNLFPETPqQQSDHENQNLNQNLNSLSKSA 134
                      689*************************************************************444332222233333333344444444444 PP

              TCP  95 akskksqksaasalnlak.esrakarararertrekmrik 133
                       +s++++++ +  l+l++ e r kar+rarer ++++ ++
  Lj6g3v1946420.2 135 CSSNSETSKGSGGLSLSRcENRVKARERARERAAKEKENE 174
                      4777777777778******************877776665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.4E-3742173IPR005333Transcription factor, TCP
PROSITE profilePS5136931.73243101IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.766153171IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MEEDEIQEQV SKFPRIENGT TFQSSSWHNN SSRIVRVSRA SGGKDRHSKV MTSKGLRDRR  60
VRLSVSTAIQ FYDLQDRLGV DQPSKAVDWL IKAAEDAISE LPSLNNLFPE TPQQQSDHEN  120
QNLNQNLNSL SKSACSSNSE TSKGSGGLSL SRCENRVKAR ERARERAAKE KENESSIAHN  180
VNNNHHHMSQ TASFTELLTG GIGSTVTVPT TTASPTGSVH QTHGGHHQWS STVTPMDYFS  240
SGLLMGHSSS RTHQSSSSSS SSPGFSGQIQ LGHSLPVSPF SGENHSDQMQ RFSFMPEHLM  300
VTSSSCSTQP SGISDYNLNF TISPGLAAGY NRGTLQSNSP SLLPHHHHLQ RFSSSQVDGS  360
SSNNNLPFFM GGAAAAPSTM ENHHHLQFSP LFDGRLQLCY GDGSRNSDQK GKGKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.104690.0root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00639PBM25215497Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0097710.0AP009771.1 Lotus japonicus genomic DNA, clone: LjT20A21, TM1936, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014518471.11e-163PREDICTED: transcription factor TCP2
RefseqXP_014518472.11e-163PREDICTED: transcription factor TCP2
RefseqXP_014518473.11e-163PREDICTED: transcription factor TCP2
SwissprotQ93V432e-88TCP2_ARATH; Transcription factor TCP2
TrEMBLA0A0L9VEY71e-154A0A0L9VEY7_PHAAN; Uncharacterized protein
STRINGGLYMA13G29160.11e-138(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.21e-56TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2